Klicka Lab undergrads present research

Congrats to Klicka Lab undergrads Sara Wang and Ross Furbush on their excellent poster presentations at UW’s annual Undergrad Research Symposium!

Biogeography of the Great-Tailed/Boat-Tailed Grackle Species Complex
Sara Wang

Distribution and Hybridization of Northwestern Crow (Corvus caurinus) with American Crow (Corvus brachyrhynchos) in Pacific Northwest using Mitochondrial DNA
Ross Furbush

In defense of specimen collecting for museums

The Klicka Lab fully supports the conclusions of Rocha et al. (2014) and the merits of specimen collecting for natural history museums. The 100+ coauthors of this paper represent more than 60 research institutions on six continents. As stated by Rocha et al., “Halting collection of voucher specimens by scientists would be detrimental not only to our understanding of Earth’s diverse biota and its biological processes, but also for conservation and management efforts.”

Link to full article: [Rocha et al. 2014]

new publications update

2014

  • Powell, A. F. L. A., F. K. Barker, S. M. Lanyon, K. J. Burns, J. Klicka, and I. J. Lovette. 2014. A comprehensive species-level molecular phylogeny of the New World blackbirds (Icteridae). Molecular Phylogenetics and Evolution 71:  94–112.

2013

  • Bryson, R. W., J. Chaves, B. T. Smith, M. Miller, K. Winker,  J. L. Pérez-Emán, and J. Klicka. 2013. Diversification across the New World within the ‘blue’ cardinalids (Aves: Cardinalidae). Journal of Biogeography. doi:10.1111/jbi.12218
  • Chaves, J. A., J. R. Hidalgo, and J. Klicka. 2013. Biogeography and evolutionary history of the Neotropical genus Saltator (Aves: Thraupini). Journal of Biogeography 40: 2180–2190.
  • Pulgarín-Ra, P. C., B. T. Smith, R. W. Bryson, and J. Klicka. 2013. Multilocus phylogeny and biogeography of the New World Pheucticus grosbeaks (Aves: Cardinalidae). Molecular Phylogenetics and Evolution 69: 1222–1227.
  • Voelker, G., R. C. K. Bowie and J. Klicka. 2013. Gene trees, species trees and Earth history combine to shed light on the evolution of migration in a model avian system. Molecular Ecology 22: 3333-3344.
  • Barker, F. K., K. J. Burns, J. Klicka, S. M. Lanyon, and I. J. Lovette. 2013. Going to extremes: contrasting rates of diversification in a recent radiation of New World passerine birds. Systematic Biology 62: 298-320.
  • Smith, B. T., and J. Klicka. 2013. Examining the role of effective population size on mitochondrial and multilocus divergence time discordance in a songbird. PLoS ONE 8: ee55161.

RADseq training to kick-start 2014

Members of the Klicka Lab attended a ddRADseq training workshop hosted by the Leache Lab here at UW. Next-generation sequencing (NGS) platforms enable low-cost sequencing of whole or partial genomes in a relatively short time. Double-digest restriction-site associated DNA sequencing (ddRADseq) is an exciting new NGS method for population genomics, and ddRADseq will provide lab members with an attractive alternative to sequence capture methods currently used in the lab. Special thanks to Jared Grummer and the Leache Lab for all of their hard work and patience!

RADseq_Workshop

Front row, left to right: Andreas Chavez, Itzue Caviedes-Solis, Rob Bryson, Rubi Meza, Dustin Wood, Jared Grummer. Back row, left to right: Andy Gottscho, Jon Richmond, Matt McElroy, Kevin Epperly, Adam Leaché, Leonard Jones.

Two new grad students join the Klicka Lab

Two new graduate students recently joined the Klicka Lab. CJ Battey graduated from UC Berkeley in 2010 with a double major in Integrative Biology and English, and is broadly interested in avian evolution and phylogeography. Outside of the lab CJ enjoys slack-key guitar and South American politics. Dave Slager obtained his MS in Wildlife Ecology from Ohio State University in 2011, and is broadly interested in evolution and systematics, especially avian phylogenetics, phylogeography, niche evolution, speciation, and biogeography. Dave is is a seasoned field ornithologist, and in his spare time enjoys birding and studying avian field identification, species distributions, and natural history. Welcome aboard!!

CJ Battey.

CJ Battey.

Dave Slager.

Dave Slager.

 

Birds, and snakes, and lizards! Oh, my!

Durango2013We spent several weeks in the mountains of Mexico this summer collecting samples for our recently funded project on the comparative phylogeography of Mexican pine-oak birds and herps.  The bird crew and the herp crew played well together and we both found our target species.  Special thanks to our friends at the Universidad Autónoma de Nuevo León and Universidad Juárez del Estado de Durango for their help!  ¡Viva México! [MLZ blog about trip to El Cielo]

Photo caption: Rob Bryson (left) herping while John Klicka (right) dubiously watches and enjoys a snack. Photo by Alejandro Huereca (affectionately dubbed Treebeard on this trip).

Welcome new Klicka Lab members!

Welcome new Klicka Lab members! These volunteers will be learning molecular lab techniques centered around Sanger and next-gen sequencing. All three are also working in the Burke Museum’s Ornithology Collections.

  • Sara Wang. Sara is a senior here at the UW pursuing a double degree in Biology and Environmental Science and Resource Management. She is broadly interested in avian phylogeny and behavior and wildlife rehabilitation.
  • Michael Chung. Michael is a 2012 graduate of Michigan State University, where he majored in Zoology. His research interests are in ecology, evolution, and animal behavior.
  • Kevin Epperly. Kevin graduated from the UW in 2007, with a major in Anthropology. He has worked in the ornithology collection at the Burke Museum for seven years. Kevin’s research interests include phylogenetics, phylogeography, behavioral ecology, population mechanics, and emergent systems.

Two new publications

Two of our papers were recently published:

Manthey, J. D., J. Klicka, and G. M. Spellman. 2012. Is gene flow promoting the reversal of Pleistocene divergence in the Mountain Chickadee (Poecile gambeli)? PLoS ONE 7: e49218.[link to paper]

Smith, B. T., R. W. Bryson, V. Chua, L. Africa,  and J. Klicka. 2012. Speciational history of North American Haemorhous finches (Aves: Fringillidae) inferred from multilocus data. Molecular Phylogenetics and Evolution. [link to paper]

New paper gets Faculty of 1000 recommendation

Our recent paper published in Ecology Letters was recommended by the Faculty of 1000 as an important paper in ecology.  In our study, we compared latitudinal range patterns between families of New World vertebrates that had ancestral geographic origins in North and South America.  We found that families that originated in South America exhibited strong niche conservatism and were largely restricted to the Neotropical region.  In contrast, families that originated in North America were more widely distributed across the Nearctic and Neotropical regions.  We suggest that this asymmetry in niche conservatism has influenced biodiversity patterns in the New World, and is one of the underlying causes of the latitudinal biodiversity gradient.

Smith BT, Bryson RW, Houston D, Klicka J. 2012. An asymmetry in niche conservatism contributes to the latitudinal species diversity gradient in New World vertebrates. Ecology Letters 15: 1318-1325.